Swiss Pdb Viewer Deep View

 

 

 

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Last modified
09. Feb 2000
by N.Guex
& T.Schwede

 

 

 

 










 

 

 

 

 

 


Scan for sequence pattern (PROSITE)

The amino acid sequence of the current layer can be searched for the occurence of specific sequence pattern, e.g. glycosylation sites etc. Use the "Find Sequence" menu to input a search pattern. The search string can be a PROSITE pattern.

It is possible to scan the current layer sequence against all prosite pattern. The current prosite pattern file prosite.dat can be downloaded from

http://www.expasy.ch/prosite/

Copy this file into your "spdbv/usrstuff" directory, then use the "Search for prosite pattern" function in the "Edit" menu.