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: Class BuildJembossForm
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org.emboss.jemboss.gui.form
Class BuildJembossForm

java.lang.Object
  |
  +--org.emboss.jemboss.gui.form.BuildJembossForm
All Implemented Interfaces:
java.awt.event.ActionListener, java.util.EventListener
public class BuildJembossForm
extends java.lang.Object
implements java.awt.event.ActionListener

Responsible for displaying the graphical representation of the ACD EMBOSS files. Generates & runs command lines and display results.

Author:
T. J. Carver

Field Summary
protected static javax.swing.JPanel advSection
           
protected static javax.swing.JPanel inpSection
           
protected static javax.swing.JPanel outSection
           
protected static OutputSequenceAttributes outSeqAttr
           
protected static javax.swing.JPanel reqdSection
           
 
Constructor Summary
BuildJembossForm(int i, java.lang.String[] allDes, java.lang.String[] db, java.lang.String[] allAcd, java.lang.String[] envp, java.lang.String cwd, java.lang.String embossBin, java.lang.String acdDirToParse, boolean withSoap, javax.swing.JPanel p2, uk.ac.mrc.hgmp.embreo.EmbreoParams mysettings, java.util.Hashtable acdStore, javax.swing.JFrame f)
           
 
Method Summary
 void actionPerformed(java.awt.event.ActionEvent ae)
          Action events Exit, Help, GO, & Show results
 void attach(int app, javax.swing.JPanel p3, javax.swing.Box fieldPane)
           
 java.lang.String checkParameters(ParseAcd parseAcd, int numofFields, java.util.Hashtable filesToMove)
           
 java.lang.String filesForSoap(java.lang.String fn, java.lang.String options, java.lang.String val, java.util.Hashtable filesToMove)
           
 java.util.Hashtable getacdStore()
           
 java.lang.String getAcdText()
          Get the contents of an ACD file in the form of a String.
 java.lang.String getCommand()
          Get the command line for the Standalone version.
 java.lang.String getCommand(java.util.Hashtable filesToMove)
          Get the command line for the SOAP version.
 byte[] getPNGByte(java.lang.String pngFiles)
           
 
Methods inherited from class java.lang.Object
, clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

outSeqAttr

protected static OutputSequenceAttributes outSeqAttr

advSection

protected static javax.swing.JPanel advSection

reqdSection

protected static javax.swing.JPanel reqdSection

outSection

protected static javax.swing.JPanel outSection

inpSection

protected static javax.swing.JPanel inpSection
Constructor Detail

BuildJembossForm

public BuildJembossForm(int i,
                        java.lang.String[] allDes,
                        java.lang.String[] db,
                        java.lang.String[] allAcd,
                        java.lang.String[] envp,
                        java.lang.String cwd,
                        java.lang.String embossBin,
                        java.lang.String acdDirToParse,
                        boolean withSoap,
                        javax.swing.JPanel p2,
                        uk.ac.mrc.hgmp.embreo.EmbreoParams mysettings,
                        java.util.Hashtable acdStore,
                        javax.swing.JFrame f)
Method Detail

attach

public void attach(int app,
                   javax.swing.JPanel p3,
                   javax.swing.Box fieldPane)

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent ae)
Action events Exit, Help, GO, & Show results
Specified by:
actionPerformed in interface java.awt.event.ActionListener

getPNGByte

public byte[] getPNGByte(java.lang.String pngFiles)

checkParameters

public java.lang.String checkParameters(ParseAcd parseAcd,
                                        int numofFields,
                                        java.util.Hashtable filesToMove)

filesForSoap

public java.lang.String filesForSoap(java.lang.String fn,
                                     java.lang.String options,
                                     java.lang.String val,
                                     java.util.Hashtable filesToMove)

getCommand

public java.lang.String getCommand()
Get the command line for the Standalone version.
Parameters:
Hashtable - of the files to be transferrred
Returns:
String command line to use

getCommand

public java.lang.String getCommand(java.util.Hashtable filesToMove)
Get the command line for the SOAP version.
Parameters:
Hashtable - of the files to be transferrred
Returns:
String command line to use

getAcdText

public java.lang.String getAcdText()
Get the contents of an ACD file in the form of a String.
Parameters:
String - of the ACD file name
String - representation of the ACD

getacdStore

public java.util.Hashtable getacdStore()
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